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de analysis
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5
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4
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2.2k
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Why does the filtering of lowly expressed genes for analysis with edgeR must be done unsupervised?
edgeR
RNAseq
DE analysis
gene filtering
7.8 years ago
Mau
▴ 50
3
votes
6
replies
1.9k
views
Why NanoStringDiff package so slow?
NanoStringDiff
NanoString
nCounter
DE analysis
updated 6 months ago by
georgersmith
• 0 • written 4.8 years ago by
lim6432
▴ 50
2
votes
7
replies
2.4k
views
About differentially expressed genes that found by edgeR
edgeR
DE analysis
fold change
cpm
updated 7.8 years ago by
Ryan C. Thompson
★ 7.9k • written 7.8 years ago by
Sara
▴ 10
1
vote
8
replies
1.9k
views
[Outlier Gene removal] - One sample with outlier counts for some genes
RNAseq
DESeq2
outlier
counts
DE analysis
updated 4.0 years ago by
Kevin Blighe
★ 3.9k • written 4.0 years ago by
DcL-A
• 0
0
votes
3
replies
1.5k
views
Is the CPM filtering method from NOISeq unsupervised?
rnaseq
de analysis
gene filtering
noiseq
updated 6.7 years ago by
James W. MacDonald
65k • written 6.7 years ago by
Mau
▴ 50
0
votes
1
reply
931
views
miR DE analysis using DeSeq2
DE analysis
miR
deseq2
mirplant
updated 6.6 years ago by
Michael Love
42k • written 6.6 years ago by
weissert
• 0
6 results • Page
1 of 1
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Replies
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
> Any suggestions for methylation data segmentation? I think the same segmentation can be used.
Comment: deseq2 results
by
swbarnes2
★ 1.3k
Cross-posted https://www.biostars.org/p/9594331/#9594458
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
by
Mike Smith
★ 6.5k
The other answers here are all good and demonstrate the issue with floating point comparisons nicely. I'd like to add that your particular…
Comment: More regions in union when increasing DBA$config$mergeOverlap
by
Ian D.
▴ 70
Nudging my question. I could do with confirmation before proceeding with my current projects. Thank you.
Comment: Extremely small p-values using Limma for proteomic data
by
Robert Castelo
★ 3.3k
From the point of view of visualization, I find handy the fact that raw p-values give more resolution than adjusted ones, which allows one …
Votes
A: Volcanoplot with limma - RAW P-values or Adj.P-Values
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: minfi latest update for EPIC V2 chip
A: Error in DESeqDataSet : some values in assay are not integers
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Michael Love
42k
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Haibo Liu
• 0
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HS
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DevelopingHippo
• 0
Scholar
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Robert Castelo
★ 3.3k
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